HED examples and tutorials

Links

• PDF docs

• Source code

Guides:

• HED introduction
  • Brief history of HED
  • Goals of HED
  • A basic HED annotation
  • How to get started
• BIDS annotation quickstart
  • How HED works in BIDS
    • BIDS event files
    • JSON event sidecars
  • Create a JSON template
    • Step 1: Select generate JSON
    • Step 2: Upload an events file.
    • Step 3: Select columns to annotate
    • Step 4: Download the template.
    • Step 5: Complete the annotation.
  • Spreadsheet templates
    • Step 1: Select extract HED spreadsheet
    • Step 2: Upload a sidecar and extract.
    • Step 3: Edit the spreadsheet
    • Step 4: Merge the spreadsheet
• HED annotation quickstart
  • What is HED annotation?
  • A recipe for simple annotation
• HED validation
• HED search and summary
• HED conditions and design matrices
  • HED annotations for conditions
    • Direct condition variables
    • Defined condition variables
    • Direct vs defined approaches
    • Column vs row annotations
  • Experimental design concepts
    • Design matrices and factor variables
    • Types of condition encoding
• Event file restructuring quickstart
  • What is event file restructuring?
  • The remodeling process
  • JSON transformation files
    • Basic remodel operation syntax
    • Applying multiple remodel operations
    • More complex remodeling
    • Remodeling file locations
  • Using the remodeling tools
    • Online tools for debugging
    • The command-line interface
    • Jupyter notebooks for remodeling

Tools:

• CTagger GUI tagging tool
  • Installation
    • Standalone application installation
    • Installation in the EEGLAB environment
  • Loading BIDS event files
  • Adding HED annotation
    • Validating your annotation
• File remodeling tools
  • Event remodel overview
    • Transformation operations
    • Summary operations
    • Available operations
  • Installing the remodel tools
  • Remodel command-line interface
    • Calling remodel tools
    • Remodel command-line arguments
  • Remodel scripts
    • Backing up events
    • Restructuring event files
    • Restoring event files
  • Remodel with HED
    • Extracting HED information from BIDS
    • Directly specifying HED information
  • Remodel file format
  • Remodel operations
    • Create event
    • Factor column
    • Factor HED tags
    • Factor HED type
    • Merge consecutive
    • Number groups
    • Number rows
    • Remap columns
    • Remove columns
    • Remove rows
    • Rename columns
    • Reorder columns
    • Split event
    • Summarize column names
    • Summarize column values
    • Summarize HED type
  • Remodel implementation details
    • The PARAMS dictionary
    • Operation class constructor
    • The do_op implementation
    • Additional requirements for summaries
• HED online tools
  • Browser-based access
    • Event files
    • Sidecar files
    • Spreadsheet files
    • String online tools
    • Schema online tools
  • HED RESTful services
    • Service setup
    • Request format
    • Service responses
• HED Python tools
  • Jupyter notebooks for HED in BIDS
    • Summarize BIDS event files
    • Extract a JSON sidecar template
    • JSON sidecar to spreadsheet
    • Validate HED in a BIDS dataset
  • Jupyter notebooks for data curation
    • Consistency of BIDS event files
  • Calling HED tools
    • Getting a list of files
    • Dictionaries of filenames
    • Logging processing steps
• HED MATLAB tools
  • HED services in MATLAB
    • Overview of service requests
    • Setting up a session from MATLAB
    • Creating a request structure
    • Making a service request
    • Decoding a service response
  • EEGLAB plug-in integration
    • Installing HEDTools
    • Annotating datasets
    • HED-based epoching
• HED JavaScript tools
  • Javascript tool installation
  • Javascript package organization
  • Javascript programmatic interface

Datasets:

• HED test datasets
  • eeg_ds003654s_hed
  • eeg_ds003654s_hed_inheritance
  • eeg_ds003654s_hed_library
  • eeg_ds003654s_hed_longform
  • fmri_soccer21_hed
  • BIDS validation
• HED repository datasets

Indices and tables

• Index

• Module Index

• Search Page